SNP Arrays for Species Identification in Salmonids

Roman Wenne, Agata Drywa, Matthew Kent, Kristil Kindem Sundsaasen, Sigbjørn Lien

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Citations (Scopus)

Abstract

The use of SNP genotyping microarrays, developed in one species to analyze a closely related species for which genomic sequence information is scarce, enables the rapid development of a genomic resource (SNP information) without the need to develop new species-specific markers. Using large numbers of microarray SNPs offers the best chance to detect informative markers in nontarget species, markers that can very often be assayed using a lower throughput platform as is described in this paper.
Original languageEnglish
Title of host publicationMarine Genomics
Subtitle of host publicationMethods in Molecular Biology
PublisherHumana Press
Pages97-111
Number of pages14
Volume1452
ISBN (Print)978-1-4939-3772-1
DOIs
Publication statusPublished - 27 Jul 2016

Publication series

NameMarine Genomics
Volume1452
ISSN (Print)1064-3745
ISSN (Electronic)1940-6029

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Keywords

  • SNP array
  • Salmon
  • Genotyping
  • Brown trout
  • Rainbow trout

Cite this

Wenne, R., Drywa, A., Kent, M., Sundsaasen, K. K., & Lien, S. (2016). SNP Arrays for Species Identification in Salmonids. In Marine Genomics: Methods in Molecular Biology (Vol. 1452, pp. 97-111). [Chapter 6] (Marine Genomics; Vol. 1452). Humana Press. https://doi.org/10.1007/978-1-4939-3774-5_6