Proteomic-based biotyping reveals hidden diversity within a microalgae culture collection: An example using Dunaliella.

Kaveh Emami, Ethan Hack, Andrew Nelson, Chelsea M Brain, Fern M Lyne, Ehsan Mesbahi, John G Day, Gary S Caldwell

Research output: Contribution to journalArticle

12 Citations (Scopus)

Abstract

Accurate and defendable taxonomic identification of microalgae strains is vital for culture collections, industry and academia; particularly when addressing issues of intellectual property. We demonstrate the remarkable effectiveness of Matrix Assisted Laser Desorption Ionisation Time of Flight Mass Spectrometry (MALDI-TOF-MS) biotyping to deliver rapid and accurate strain separation, even in situations where standard molecular tools prove ineffective. Highly distinctive MALDI spectra were obtained for thirty two biotechnologically interesting Dunaliella strains plus strains of Arthrospira, Chlorella, Isochrysis, Tetraselmis and a range of culturable co-occurring bacteria. Spectra were directly compared with genomic DNA sequences (internal transcribed spacer, ITS). Within individual Dunaliella isolates MALDI discriminated between strains with identical ITS sequences, thereby emphasising and enhancing knowledge of the diversity within microalgae culture collections. Further, MALDI spectra did not vary with culture age or growth stage during the course of the experiment; therefore MALDI presents stable and accurate strain-specific signature spectra. Bacterial contamination did not affect MALDI's discriminating power. Biotyping by MALDI-TOF-MS will prove effective in situations wherein precise strain identification is vital, for example in cases involving intellectual property disputes and in monitoring and safeguarding biosecurity. MALDI should be accepted as a biotyping tool to complement and enhance standard molecular taxonomy for microalgae.
Original languageEnglish
Article number10036
Number of pages1
JournalScientific Reports
Volume5
Early online date12 May 2015
DOIs
Publication statusPublished - 12 May 2015

    Fingerprint

Cite this

Emami, K., Hack, E., Nelson, A., Brain, C. M., Lyne, F. M., Mesbahi, E., ... Caldwell, G. S. (2015). Proteomic-based biotyping reveals hidden diversity within a microalgae culture collection: An example using Dunaliella. Scientific Reports, 5, [10036]. https://doi.org/10.1038/srep10036