Extremophiles in an Antarctic Marine Ecosystem

Iain Dickinson, William Goodall-Copestake, Michael Thorne, Thomas Schlitt, Maria Ávila-Jiménez, british an

Research output: Contribution to journalArticle

1 Downloads (Pure)

Abstract

Recent attempts to explore marine microbial diversity and the global marine microbiome have indicated a large proportion of previously unknown diversity. However, sequencing alone does not tell the whole story, as it relies heavily upon information that is already contained within sequence databases. In addition, microorganisms have been shown to present small-to-large scale biogeographical patterns worldwide, potentially making regional combinations of selection pressures unique. Here, we focus on the extremophile community in the boundary region located between the Polar Front and the Southern Antarctic Circumpolar Current in the Southern Ocean, to explore the potential of metagenomic approaches as a tool for bioprospecting in the search for novel functional activity based on targeted sampling efforts. We assessed the microbial composition and diversity from a region north of the current limit for winter sea ice, north of the Southern Antarctic Circumpolar Front (SACCF) but south of the Polar Front. Although, most of the more frequently encountered sequences were derived from common marine microorganisms, within these dominant groups, we found a proportion of genes related to secondary metabolism of potential interest in bioprospecting. Extremophiles were rare by comparison but belonged to a range of genera. Hence, they represented interesting targets from which to identify rare or novel functions. Ultimately, future shifts in environmental conditions favoring more cosmopolitan groups could have an unpredictable effect on microbial diversity and function in the Southern Ocean, perhaps excluding the rarer extremophiles.
Original languageEnglish
Number of pages18
JournalMicroorganisms
Volume4
Issue number1
DOIs
Publication statusPublished - 11 Jan 2016

Keywords

  • Antarctica
  • bacteria
  • biodiversity
  • metagenome
  • polar
  • marine
  • bioprospecting
  • fosmid
  • extremophile
  • rare

Fingerprint Dive into the research topics of 'Extremophiles in an Antarctic Marine Ecosystem'. Together they form a unique fingerprint.

Cite this