Analysis of expressed sequence tags from the green alga Ulva linza (Chlorophyta)

Michele Stanley, R M Perry, J A Callow

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25 Citations (Scopus)

Abstract

There is a general lack of genomic information available for chlorophyte seaweed genera such as Ulva, and in particular there is no information concerning the genes that contribute to adhesion and cell wall biosynthesis for this organism. Partial sequencing of cDNA libraries to generate expressed sequence tags (ESTs) is an effective means of gene discovery and characterization of expression patterns. In this study, a cDNA library was created from sporulating tissue of Ulva linza L. Initially, 650 ESTs were randomly selected from a cDNA library and sequenced from their 5' ends to obtain an indication of the level of redundancy of the library (21%). The library was normalized to enrich for rarer sequences, and a further 1920 ESTs were sequenced. These sequences were subjected to contig assembly that resulted in a unigene set of approximately 1104 ESTs. Forty-eight percent of these sequences exhibited significant similarity to sequences in the databases. Phylogenetic comparisons are made between selected sequences with similarity in the databases to proteins involved in aspects of extracellular matrix/cell wall assembly and adhesion.
Original languageEnglish
Pages (from-to)1219-1226
Number of pages8
JournalJ PHYCOL
Volume41
Issue number6
DOIs
Publication statusPublished - 2005

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Keywords

  • ENTEROMORPHA
  • AMINO-ACID-SEQUENCE
  • Biotechnology & Applied Microbiology
  • SUBSTRATUM ADHESION
  • ZOOSPORES
  • DIATOMS
  • GENOME SEQUENCE
  • Marine & Freshwater Biology
  • BACILLARIOPHYCEAE
  • EXTRACELLULAR-MATRIX
  • ACHNANTHES-LONGIPES
  • FOULING ALGA ENTEROMORPHA
  • RED ALGA
  • PORPHYRA-YEZOENSIS
  • ESTABLISHMENT
  • Marine & Freshwater BiologyPlant Sciences
  • GENERATION
  • SETTLEMENTHYDROXYPROLINE-RICH GLYCOPROTEINS
  • MICROARRAY ANALYSIS
  • CHLAMYDOMONAS-REINHARDTII
  • Plant Sciences

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